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Table 4 Key characteristics of selected platforms

From: Typing methods based on whole genome sequencing data

Platform

Reference

Typing approach

Central instance/ Local instance

Commercial (C)/ Academic (A)

BIGSdb

[151]

wg/cgMLST

Both possible

A

Bionumerics

http://www.applied-maths.com/applications/wgmlst

wg/cgMLST and SNP

Both possible

C

CGE

[152]

cgMLST and SNP

Cloud

A

COMPARE

[153]

cgMLST and SNP

Cloud

A

Enterobase

[16]

wg/cgMLST and SNP

Cloud

A

INNUENDO

[154]

wg/cgMLST

Local

A

IRIDA

[155]

wg/cgMLST and SNP

Local

A

NCBI Pathogens

[156]

wg/cgMLST and SNP

Cloud

A

PathogenWatch

https://pathogen.watch

cgMLST

Cloud

A

PATRIC

[68, 150]

SNP

Cloud

A

SeqSphere+

https://www.ridom.de/seqsphere/

wg/cgMLST

Local

C