Table 2 Available cgMLST schemes

Enterobase

http://enterobase.warwick.ac.uk/

Yes

Salmonella, Escherichia/Shigella, Clostridioides, Vibrio, Yersinia, Helicobacter, Moraxella

Pasteur Institute

https://bigsdb.pasteur.fr/

Yes

Klebsiella pneumoniae/ quasipneumoniae/variicola, Listeria, Bordetella, Corynebacterium diphtheriae, Yersinia, Leptospira Elizabethkingia anopheles/meningoseptica/miricola

Ridom

https://cgMLST.org/ncs

Yes

Acinetobacter baumannii, Brucella melitensis, Clostridioides difficile, Enterococcus faecalis, Enterococcus faecium, Escherichia coli, Francisella tularensis, Klebsiella pneumoniae/variicola/quasipneumoniae, Legionella pneumophila, Listeria monocytogenes, Mycobacterium tuberculosis/bovis/africanum/canettii, Mycoplasma gallisepticum, Staphylococcus aureus

Applied Maths

http://www.applied-maths.com/applications/wgmlst

No

Acinetobacter baumannii, Bacillus cereus, Bacillus subtilis, Burkholderia cepacia complex, Brucella spp.

Campylobacter coli - C. jejuni, Citrobacter spp., Clostridium difficile, Cronobacter spp., Enterobacter cloacae, Enterococcus faecalis, Enterococcus faecium, Enterococcus raffinosus, Escherichia coli / Shigella, Francisella tularensis, Klebsiella aerogenes, Klebsiella oxytoca, Klebsiella pneumoniae, Legionella pneumophila, Listeria monocytogenes, Micrococcus spp., Mycobacterium bovis, Mycobacterium leprae, Mycobacterium tuberculosis, Neisseria gonorrhoeae, Pseudomonas aeruginosa, Salmonella enterica, Serratia marcescens, Staphylococcus aureus, Staphylococcus epidermidis, Staphylococcus pseudointermedius, Streptococcus pyogenes

INNUENDO/ chewBBACA

http://chewbbaca.online/

Yes

Acinetobacter calcoaceticus/baumannii complex, Legionella pneumophila, Streptococcus pyogenes, Escherichia coli, Yersinia enterocolitica, Campylobacter jejuni, Salmonella