Quality metric | Salmonella enterica | Listeria monocytogenes | Escherichia coli | Shigella sp. | Campylobacter jejuni | Vibrio parahaemolyticus |
---|---|---|---|---|---|---|
Average read quality Q score for R1 and R2 | > = 30 | > = 30 | > = 30 | > = 30 | > = 30 | > = 30 |
Average coverage | > = 30X | > = 20X | > = 40X | > = 40X | > = 20X | > = 40X |
De novo assembly: Seq. length (Mbp) | ~ 4.3–5.2 | ~ 2.7–3.2 | ~ 4.5–5.9 | ~ 4.0–5.0 | ~ 1.5–1.9 | ~ 4.8–5.5 |
De novo assembly: no. contigs | <=300 | <=300 | <=500 | <=650 | <=300 | <=300 |