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Table 8 In silico analyses results of antimicrobial resistance genes and mutations within all Salmonella Typhimurium strains

From: Evaluation of WGS-subtyping methods for epidemiological surveillance of foodborne salmonellosis

Strain ID

Acquired antibiotic resistance genes:

Mutations in gyrA gene:

Mutations in parC gene:

Food strains:

aH133060375

Aminoglycoside (aac(6′)-Iaa)

Absent

Absent

aH133060376

Aminoglycoside (aac(6′)-Iaa)

Absent

Absent

aH133060377

Aminoglycoside (aac(6′)-Iaa)

Absent

Absent

aH133060378

Aminoglycoside (aac(6′)-Iaa)

Absent

Absent

Outbreak strains:

 H132940743

Aminoglycoside (aac(6′)-Iaa)

Absent

Absent

 H132940744

Aminoglycoside (aac(6′)-Iaa)

Absent

Absent

 H132940745

Aminoglycoside (aac(6′)-Iaa)

Absent

Absent

 H132940746

Aminoglycoside (aac(6′)-Iaa)

Absent

Absent

 H132940748

Aminoglycoside (aac(6′)-Iaa)

Absent

Absent

 H132940749

Aminoglycoside (aac(6′)-Iaa)

Absent

Absent

 H132940750

Aminoglycoside (aac(6′)-Iaa)

Absent

Absent

 H132940751

Aminoglycoside (aac(6′)-Iaa)

Absent

Absent

 H132940753

Aminoglycoside (aac(6′)-Iaa)

Absent

Absent

 H132940754

Aminoglycoside (aac(6′)-Iaa)

Absent

Absent

 H132940756

Aminoglycoside (aac(6′)-Iaa)

Absent

Absent

 H133000645

Aminoglycoside (aac(6′)-Iaa)

Absent

Absent

 H133000654

Aminoglycoside (aac(6′)-Iaa)

Absent

Absent

 H133300609

Aminoglycoside (aac(6′)-Iaa)

Absent

Absent

Non-outbreak strains:

 H121600325

Aminoglycoside (aac(6′)-Iaa)

Absent

Absent

 H122020454

Aminoglycoside (aac(6′)-Iaa)

Absent

Absent

 H122720573

Aminoglycoside (aac(6′)-Iaa)

Absent

Absent

 H123020544

Aminoglycoside (aac(6′)-Iaa)

Absent

Absent

 H123920661

Aminoglycoside (aac(6′)-Iaa)

Absent

Absent

 H124860455

Aminoglycoside (aac(6′)-Iaa)

Absent

Absent

 H132780266

Aminoglycoside (aac(6′)-Iaa)

Absent

Absent

 H132920685

Aminoglycoside (aac(6′)-Iaa)

Absent

Absent

 H132960590

Aminoglycoside (aac(6′)-Iaa)

Absent

Absent

 H132980531

Aminoglycoside (aac(6′)-Iaa)

Absent

Absent

 H133040470

Aminoglycoside (aac(6′)-Iaa)

Absent

Absent

 H133260293

Aminoglycoside (aac(6′)-Iaa)

Absent

Absent

 H133400611

Aminoglycoside (aac(6′)-Iaa)

Absent

Absent

  1. aStrains of Salmonella Typhimurium isolated from mayonnaise