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Table 2 MLST, rMLST, cgMLST and wgMLST results of Salmonella Typhimurium outbreak and non-outbreak strains

From: Evaluation of WGS-subtyping methods for epidemiological surveillance of foodborne salmonellosis

Strain ID

MLST:

rMLST:

cgMLST:

wgMLST:

Food strains:

aH133060375

19

1392

60,658

70,401

aH133060376

19

1392

60,660

70,402

aH133060377

19

1392

36,749

70,514

aH133060378

19

1392

60,661

70,403

Outbreak strains:

 H133000654

19

1392

36,749

70,398

 H132940743

19

1392

36,749

70,404

 H132940744

19

1392

60,662

70,405

 H132940745

19

1392

60,663

70,406

 H132940746

19

1392

36,749

70,431

 H132940748

19

1392

60,683

70,432

 H132940749

19

1392

36,749

70,433

 H132940750

19

1392

60,684

70,439

 H132940751

19

1392

60,685

70,440

 H132940753

19

1392

61,002

70,834

 H132940754

19

1392

36,754

70,835

 H132940756

2392

1392

61,001

70,833

 H133000645

19

1392

36,749

 

 H133300609

19

1392

36,749

70,944

 H132300541

19

1391

36,751

70,951

Non-outbreak strains:

 H133260293

19

1392

71,438

84,026

 H132780266

19

1391

71,450

84,040

 H132960590

19

1391

36,751

84,041

 H132920685

19

1392

36,763

84,076

 H132980531

19

1391

36,774

87,971

 H121600325

19

1391

20,224

87,972

 H122720573

19

1391

20,848

87,973

 H12320661

19

1391

20,882

87,974

 H123020544

19

1391

20,711

87,975

 H122020454

19

1391

21,310

88,017

 H124860455

19

26,127

20,800

88,018

 H133040470

19

1392

71,422

84,006

 H1330400611

19

1392

71,438

84,025

  1. aStrains of Salmonella Typhimurium isolated from mayonnaise
  2. Same results for MLST, rMLST, cgMLST and wgMLST were obtained from CGE and Enterobase using Velvet and SPAdes assemblers respectively.