From: Evaluation of WGS-subtyping methods for epidemiological surveillance of foodborne salmonellosis
Strain ID | MLST: | rMLST: | cgMLST: | wgMLST: |
---|---|---|---|---|
Food strains: | ||||
aH133060375 | 19 | 1392 | 60,658 | 70,401 |
aH133060376 | 19 | 1392 | 60,660 | 70,402 |
aH133060377 | 19 | 1392 | 36,749 | 70,514 |
aH133060378 | 19 | 1392 | 60,661 | 70,403 |
Outbreak strains: | ||||
 H133000654 | 19 | 1392 | 36,749 | 70,398 |
 H132940743 | 19 | 1392 | 36,749 | 70,404 |
 H132940744 | 19 | 1392 | 60,662 | 70,405 |
 H132940745 | 19 | 1392 | 60,663 | 70,406 |
 H132940746 | 19 | 1392 | 36,749 | 70,431 |
 H132940748 | 19 | 1392 | 60,683 | 70,432 |
 H132940749 | 19 | 1392 | 36,749 | 70,433 |
 H132940750 | 19 | 1392 | 60,684 | 70,439 |
 H132940751 | 19 | 1392 | 60,685 | 70,440 |
 H132940753 | 19 | 1392 | 61,002 | 70,834 |
 H132940754 | 19 | 1392 | 36,754 | 70,835 |
 H132940756 | 2392 | 1392 | 61,001 | 70,833 |
 H133000645 | 19 | 1392 | 36,749 |  |
 H133300609 | 19 | 1392 | 36,749 | 70,944 |
 H132300541 | 19 | 1391 | 36,751 | 70,951 |
Non-outbreak strains: | ||||
 H133260293 | 19 | 1392 | 71,438 | 84,026 |
 H132780266 | 19 | 1391 | 71,450 | 84,040 |
 H132960590 | 19 | 1391 | 36,751 | 84,041 |
 H132920685 | 19 | 1392 | 36,763 | 84,076 |
 H132980531 | 19 | 1391 | 36,774 | 87,971 |
 H121600325 | 19 | 1391 | 20,224 | 87,972 |
 H122720573 | 19 | 1391 | 20,848 | 87,973 |
 H12320661 | 19 | 1391 | 20,882 | 87,974 |
 H123020544 | 19 | 1391 | 20,711 | 87,975 |
 H122020454 | 19 | 1391 | 21,310 | 88,017 |
 H124860455 | 19 | 26,127 | 20,800 | 88,018 |
 H133040470 | 19 | 1392 | 71,422 | 84,006 |
 H1330400611 | 19 | 1392 | 71,438 | 84,025 |