Evaluation of WGS-subtyping methods for epidemiological surveillance of foodborne salmonellosis

Table 1 MLST, rMLST, cgMLST and wgMLST results of Salmonella Dublin outbreak and non-outbreak strains

Strain ID:	MLST:	rMLST:	cgMLST:	wgMLST:
Outbreak strains:
902,637	10	1429	38,665	259,116
MF036933	10	1429	38,665	259,117
MF036980	10	1429	38,665	259,118
517,138	10	1429	38,665	259,121
MF6869	10	1429	38,665	259,127
M26560	10	1429	38,665	259,123
MF7067	10	1429	38,665	259,122
MF7174	10	1429	38,665	259,128
40,986	10	1429	38,665	259,126
Non-outbreak strains:
MF038630	10	1429	38,666	259,131
M1314220	10	26,829	38,664	259,120
M54827	10	1429	38,667	259,129
MB12371	10	26,829	38,668	259,130
MF5994	10	92,451	38,669	259,145
MB7978	10	1429	38,670	259,133
B289223	10	1429	38,671	259,134
11F310	10	1429	38,655	259,135
MB98550	10	3696	38,657	259,142
MF8409	10	1429	38,658	259,139
W151R0	10	1429	38,659	259,140
B261193	10	92,450	38,660	259,141
MP015199F	10	1429	38,661	259,148
Food isolates:
^a2014LSAL02972	10	1429	230,922	283,421
^a2015LSAL00258	10	96,856	146,469	283,422

Same results for MLST, rMLST, cgMLST and wgMLST were obtained from CGE and Enterobase using Velvet and SPAdes assemblers respectively.
^aSalmonella Dublin strains isolated from raw milk cheeses related to other outbreaks occurred in France [10]

ISSN: 2524-4655